Datenbank-Module hinzugefügt

Makefile

@@ -1,4 +1,5 @@
 link:
 	pip install -e ./
 
-
+doc:
+	python setup.py build_sphinx

pytestpavement/__init__.py

@@ -1,11 +1,14 @@
 # main __init__.py
 
 from .analysis import *
+from .helper import *
 from .io import *
+from .models import *
 from .versuche import *
 
 __all__ = [
     # IO
+    "connect_mongo_db",
     "read_geosys",
     # Versuche
     "TestSchichtenverbundV2GeoSys",

pytestpavement/helper/__init__.py

@@ -0,0 +1,3 @@
+from .filehasher import calc_hash_of_file
+
+__all__ = ["calc_hash_of_file"]

pytestpavement/helper/filehasher.py

@@ -0,0 +1,25 @@
+import hashlib
+from io import BytesIO
+
+
+def calc_hash_of_file(file):
+    """ calculate the hash of the file """
+
+    #read file
+    with open(file, 'rb') as fh:
+        buf = BytesIO(fh.read())
+
+    algo = hashlib.sha1()
+
+    buffer_size = 65536
+    buffer_size = buffer_size * 1024 * 1024
+
+    while True:
+        data = buf.read(buffer_size)
+        if not data:
+            break
+        algo.update(data)
+
+    hex = algo.hexdigest()
+
+    return hex

pytestpavement/io/__init__.py

@@ -1,3 +1,4 @@
 from .geosys import read_geosys
+from .mongo import connect_mongo_db
 
-__all__ = ["read_geosys"]
+__all__ = ["connect_mongo_db", "read_geosys"]

pytestpavement/io/hash.py

@@ -0,0 +1,34 @@
+import hashlib
+import os
+from io import BytesIO
+
+
+def hash_file(f: BytesIO, buffer_size=65536, algo='SH1') -> str:
+    """
+    Generate the MD5 Hash of the file and return
+
+    f of 
+    buffer_size in MB
+
+    """
+
+    algorithm = ['MD5', 'SH1']
+    assert algo in algorithm
+
+    if algo == 'MD5':
+        algo = hashlib.md5()
+    else:
+        algo = hashlib.sha1()
+
+    buffer_size = buffer_size * 1024 * 1024
+
+    while True:
+        data = f.read(buffer_size)
+        if not data:
+            break
+        algo.update(data)
+
+    algohex = algo.hexdigest()
+    f.seek(0)
+
+    return algohex

pytestpavement/io/mongo.py

@@ -0,0 +1,13 @@
+import mongoengine
+
+
+def connect_mongo_db(username='admin',
+                     password='admin',
+                     host='localhost',
+                     authentication_source='admin'):
+
+    mongoengine.connect('labtests',
+                        username=username,
+                        password=password,
+                        host=host,
+                        authentication_source=authentication_source)

pytestpavement/models/__init__.py

@@ -0,0 +1,10 @@
+from .citt import *
+from .material import *
+from .sheartest import *
+
+__all__ = [
+    # Spaltzug
+    "CITTSiffness",
+    #Dynamischer Schertest
+    "DynamicShearTestExtension",
+]

pytestpavement/models/citt.py

@@ -0,0 +1,80 @@
+import datetime
+
+from mongoengine import *
+
+from .material import Material
+
+
+class CyclicIndirectTensileTest(Document):
+
+    date = DateTimeField(default=datetime.datetime.now,
+                         wtf_options={"render_kw": {
+                             "step": "60"
+                         }})
+
+    standard = StringField(default='TP Asphalt Teil 24')
+
+    lab = StringField(default='TU Dresden', required=True)
+    auditor = StringField(default=None)
+    machine = StringField(default=None)
+
+    filehash = StringField(required=True)
+
+    project = StringField(required=True)
+    workpackage = StringField()
+    material = ReferenceField(Material, required=True)
+
+    meta = {
+        'allow_inheritance': True,
+        'index_opts': {},
+        'index_background': True,
+        'index_cls': False,
+        'auto_create_index': True,
+        'collection': 'citt',
+    }
+
+
+class CITTSiffness(CyclicIndirectTensileTest):
+
+    #metadata
+    f_set = FloatField()
+    sigma_set = FloatField()
+    T_set = FloatField()
+
+    #results
+    stiffness = FloatField()
+    #fit parameter
+    ## F
+    fit_a_F = FloatField()
+    fit_b_F = FloatField()
+    fit_d_F = FloatField()
+    fit_e_F = FloatField()
+    fit_f_F = FloatField()
+    r2_F = FloatField()
+    ## S1
+    fit_a_s_hor_1 = FloatField()
+    fit_b_s_hor_1 = FloatField()
+    fit_d_s_hor_1 = FloatField()
+    fit_e_s_hor_1 = FloatField()
+    fit_f_s_hor_1 = FloatField()
+    r2_s_hor_1 = FloatField()
+    ## S2
+    fit_a_s_hor_2 = FloatField()
+    fit_b_s_hor_2 = FloatField()
+    fit_d_s_hor_2 = FloatField()
+    fit_e_s_hor_2 = FloatField()
+    fit_f_s_hor_2 = FloatField()
+    r2_s_hor_2 = FloatField()
+    ## S-Sum
+    fit_a_s_hor_sum = FloatField()
+    fit_b_s_hor_sum = FloatField()
+    fit_d_s_hor_sum = FloatField()
+    fit_e_s_hor_sum = FloatField()
+    fit_f_s_hor_sum = FloatField()
+    r2_s_hor_sum = FloatField()
+    # data
+    time = ListField(FloatField())
+    F = ListField(FloatField())
+    N = ListField(IntField())
+    s_hor_1 = ListField(FloatField())
+    s_hor_2 = ListField(FloatField())

pytestpavement/models/material.py

@@ -0,0 +1,53 @@
+import datetime
+
+from mongoengine import *
+
+
+class Material(Document):
+
+    date = DateTimeField(default=datetime.datetime.now,
+                         wtf_options={"render_kw": {
+                             "step": "60"
+                         }})
+
+    tags = ListField(StringField())
+
+    meta = {
+        'allow_inheritance': True,
+        'index_opts': {},
+        'index_background': True,
+        'index_cls': False,
+        'auto_create_index': True,
+        'collection': 'materials'
+    }
+
+
+class Asphalt(Material):
+
+    name = StringField()
+    material = StringField()
+
+    young_modulus = FloatField()
+
+
+class Bitumen(Material):
+
+    name = StringField()
+    material = StringField()
+
+    young_modulus = FloatField()
+
+
+class Expoxy(Material):
+    name = StringField()
+    material = StringField()
+
+    young_modulus = FloatField()
+
+
+class Dummy(Material):
+
+    name = StringField()
+    material = StringField()
+
+    young_modulus = FloatField()

pytestpavement/models/sheartest.py

@@ -0,0 +1,84 @@
+import datetime
+
+from mongoengine import *
+
+from .material import Material
+
+
+class DynamicShearTest(Document):
+
+    date = DateTimeField(default=datetime.datetime.now,
+                         wtf_options={"render_kw": {
+                             "step": "60"
+                         }})
+
+    standard = StringField(default='TP Asphalt Teil 24')
+
+    lab = StringField(default='TU Dresden', required=True)
+    auditor = StringField(default=None)
+    machine = StringField(default=None)
+
+    filehash = StringField(required=True)
+
+    project = StringField(required=True)
+    workpackage = StringField()
+    
+    material1 = ReferenceField(Material, required=True)
+    material2 = ReferenceField(Material, required=True)
+    bounding = ReferenceField(Material, required=True)
+
+    meta = {
+        'allow_inheritance': True,
+        'index_opts': {},
+        'index_background': True,
+        'index_cls': False,
+        'auto_create_index': True,
+        'collection': 'sheartest',
+    }
+
+
+class DynamicShearTestExtension(DynamicShearTest):
+
+    #metadata
+    f_set = FloatField()
+    sigma_hor_set = FloatField()
+    T_set = FloatField()
+    s_set = FloatField()
+
+    #results
+    stiffness = FloatField()
+    #fit parameter
+    ## F
+    fit_a_F = FloatField()
+    fit_b_F = FloatField()
+    fit_d_F = FloatField()
+    fit_e_F = FloatField()
+    fit_f_F = FloatField()
+    r2_F = FloatField()
+    ## S1
+    fit_a_s_hor_1 = FloatField()
+    fit_b_s_hor_1 = FloatField()
+    fit_d_s_hor_1 = FloatField()
+    fit_e_s_hor_1 = FloatField()
+    fit_f_s_hor_1 = FloatField()
+    r2_s_hor_1 = FloatField()
+    ## S2
+    fit_a_s_hor_2 = FloatField()
+    fit_b_s_hor_2 = FloatField()
+    fit_d_s_hor_2 = FloatField()
+    fit_e_s_hor_2 = FloatField()
+    fit_f_s_hor_2 = FloatField()
+    r2_s_hor_2 = FloatField()
+    ## S-Sum
+    fit_a_s_hor_sum = FloatField()
+    fit_b_s_hor_sum = FloatField()
+    fit_d_s_hor_sum = FloatField()
+    fit_e_s_hor_sum = FloatField()
+    fit_f_s_hor_sum = FloatField()
+    r2_s_hor_sum = FloatField()
+    # data
+    time = ListField(FloatField())
+    F = ListField(FloatField())
+    N = ListField(IntField())
+    s_hor_1 = ListField(FloatField())
+    s_hor_2 = ListField(FloatField())

pytestpavement/versuche/base.py

@@ -0,0 +1,484 @@
+from .fit import model_cos
+
+
+class DataSineLoad():
+    """
+    Base class for lab tests with sine load
+    
+    """
+
+    def __init__(self, fname: str, debug: bool = False):
+
+        self.meta = {'d': 150, 'speciment_height': 60}
+
+        self.file = fname
+
+        self.val_col_names = ['time', 'T', 'f', 'N', 'F', 's_hor_sum']
+
+        # Header names after standardization; check if exists
+        self.val_header_names = ['speciment_height']
+        self._set_parameter()
+
+        self._file_to_bytesio()
+        self._calc_hash()
+        self._read_data()
+
+        self._standardize_data()
+        self._standardize_meta()
+
+        if not debug:
+            self._calc_missiong_values()
+            self._set_units()
+
+            self._validate_data()
+            self._postprocess_data()
+
+            self._split_data()
+            self._select_data()
+
+            self._fit_data()
+
+    def _set_parameter(self):
+
+        self.split_data_based_on_parameter = ['f']
+
+        self.col_as_int = ['N']
+        self.col_as_float = ['T', 'F', 's_piston', 's_hor_1', 'f', 's_hor_sum']
+
+        self.number_of_load_cycles_for_analysis = 5
+
+        self.unit_s = 1  #mm
+        self.unit_F = 1  #N
+        self.unit_t = 1 / 1000.  #s
+
+    def _file_to_bytesio(self):
+        """ read data and save in memory """
+
+        with open(self.file, 'rb') as fh:
+            self.buf = BytesIO(fh.read())
+
+    def _calc_hash(self):
+        """ calculate the hash of the file """
+
+        #read t
+
+        algo = hashlib.sha1()
+
+        buffer_size = 65536
+        buffer_size = buffer_size * 1024 * 1024
+
+        while True:
+            data = self.buf.read(buffer_size)
+            if not data:
+                break
+            algo.update(data)
+
+        self.hex = algo.hexdigest()
+        self.buf.seek(0)
+
+    def _read_data(self, encoding='latin-1', skiprows=14, hasunits=True):
+        """
+        read data from Labor Hart, Spaltzugversuche Steifigkeit
+        """
+
+        # metadata from file
+        meta = {}
+
+        splitsign = ':;'
+
+        with open(self.file, 'r', encoding=encoding) as f:
+            count = 0
+
+            for line in f:
+                count += 1
+
+                #remove whitespace
+                linesplit = line.strip()
+                linesplit = linesplit.split(splitsign)
+
+                if len(linesplit) == 2:
+
+                    meta[linesplit[0]] = linesplit[1]
+
+                if count >= skiprows:
+                    break
+
+        # data
+        data = pd.read_csv(self.file,
+                           encoding=encoding,
+                           skiprows=skiprows,
+                           decimal=',',
+                           sep=';')
+
+        ## add header to df
+        with open(self.file, 'r', encoding=encoding) as f:
+            count = 0
+
+            for line in f:
+                count += 1
+
+                if count >= skiprows:
+                    break
+
+        head = line.split(';')
+        data.columns = head
+
+        sigma = float(
+            os.path.split(self.file)[-1].split('MPa')[0].strip().replace(
+                ',', '.'))
+        data['sigma'] = sigma
+
+        #clean data
+        data = data.dropna(axis=1)
+
+        #define in class
+        self.meta = meta
+        self.data = data
+        return True
+
+    def _validate_data(self):
+        """ check if all column names are standardized"""
+
+        cols = self.data.columns
+
+        for val in self.val_header_names:
+            if not val in self.meta.keys():
+                raise ValueError(f"{val} not in header of data")
+
+        for col in self.val_col_names:
+            if not col in cols:
+                raise ValueError(f'{col} not standardized')
+
+    def _standardize_meta(self):
+
+        keys = list(self.meta.keys())
+        for key in keys:
+
+            if any(map(key.__contains__, ['Probenbezeichnung'])):
+                self.meta['speciment'] = self.meta.pop(key)
+
+            elif any(map(key.__contains__, ['Datum/Uhrzeit'])):
+                self.meta['datetime'] = self.meta.pop(key)
+                try:
+                    self.meta['datetime'] = pd.to_datetime(
+                        self.meta['datetime'])
+                except:
+                    pass
+
+            elif any(map(key.__contains__, ['Probenhöhe'])):
+                self.meta['speciment_height'] = float(
+                    self.meta.pop(key).replace(',', '.'))
+            elif any(map(key.__contains__, ['Probendurchmesser'])):
+                self.meta['speciment_diameter'] = float(
+                    self.meta.pop(key).replace(',', '.'))
+            elif any(map(key.__contains__, ['Solltemperatur'])):
+                self.meta['temperature'] = float(
+                    self.meta.pop(key).replace(',', '.'))
+            elif any(map(key.__contains__, ['Prüfbedingungen'])):
+                self.meta['test_version'] = self.meta.pop(key)
+            elif any(map(key.__contains__, ['Name des VersAblf'])):
+                self.meta['test'] = self.meta.pop(key)
+            elif any(map(key.__contains__, ['Prüfer'])):
+                self.meta['examiner'] = self.meta.pop(key)
+
+        return True
+
+    def _standardize_data(self):
+
+        colnames = list(self.data.columns)
+
+        for i, col in enumerate(colnames):
+            if any(map(col.__contains__, ['TIME'])):
+                colnames[i] = 'time'
+
+            elif any(map(col.__contains__, ['Temperatur'])):
+                colnames[i] = 'T'
+
+            elif any(map(col.__contains__, ['Load'])):
+                colnames[i] = 'F'
+
+            elif any(map(col.__contains__, ['Position'])):
+                colnames[i] = 's_piston'
+
+            elif any(map(col.__contains__, ['FREQUENZ'])):
+                colnames[i] = 'f'
+
+            elif any(map(col.__contains__, ['mpulsnummer_fortlaufend'])):
+                colnames[i] = 'Ncum'
+
+            elif any(map(col.__contains__, ['Impulsnummer'])):
+                colnames[i] = 'N'
+
+            elif any(map(col.__contains__, ['SENSOR 4'])):
+                colnames[i] = 's_hor_1'
+
+            elif any(map(col.__contains__, ['SENSOR Extension'])):
+                colnames[i] = 's_hor_2'
+
+        self.data.columns = colnames
+
+    def _set_units(self):
+
+        for col in ['s_hor_sum', 's_hor_1', 's_hor_2']:
+            self.data[col] = self.data[col].mul(self.unit_s)
+
+        for col in ['F']:
+            self.data[col] = self.data[col].mul(self.unit_F)
+
+        for col in ['time']:
+            self.data[col] = self.data[col].mul(self.unit_t)
+
+        return True
+
+    def _calc_missiong_values(self):
+
+        cols = self.data.columns
+
+        if not 's_hor_sum' in cols:
+            self.data['s_hor_sum'] = self.data[['s_hor_1',
+                                                's_hor_2']].sum(axis=1)
+
+    def _postprocess_data(self):
+
+        #set dtypes:
+        for col in self.col_as_int:
+            self.data[col] = self.data[col].astype('int')
+        for col in self.col_as_float:
+            try:
+                self.data[col] = self.data[col].astype('float')
+            except:
+                pass
+
+        #set index
+        self.data = self.data.set_index('time')
+
+        return True
+
+    def _split_data(self):
+
+        data_gp = self.data.groupby(self.split_data_based_on_parameter)
+
+        data_list = []
+
+        for idx, d in data_gp:
+
+            idx_diff = np.diff(d.index)
+            dt_mean = idx_diff.mean()
+
+            gaps = idx_diff > (2 * dt_mean)
+            has_gaps = any(gaps)
+
+            if has_gaps == False:
+                data_list.append(d)
+
+            else:
+                idx_gaps = (np.where(gaps)[0] - 1)[0]
+                data_list.append(d.iloc[0:idx_gaps])
+
+        #add self.
+        if len(data_list) == 0:
+            self.num_tests = 0
+            self.data = data_list[0]
+
+        else:
+            self.num_tests = len(data_list)
+            self.data = data_list
+            #break
+
+    def _select_data(self):
+        """ select N load cycles from original data """
+
+        def sel_df(df, num=5):
+            N = df['N'].unique()
+
+            if len(N) > num:
+                df_sel = df[(df['N'] >= N[-num - 1, ]) & (df['N'] <= N[-2, ])]
+                return df_sel
+            else:
+                ValueError(
+                    'Number of load cycles smaller than selectect values')
+
+        if not isinstance(self.data, list):
+            df_sel = [
+                sel_df(self.data, num=self.number_of_load_cycles_for_analysis)
+            ]
+
+        else:
+            df_sel = []
+            for d in self.data:
+                d_sel = sel_df(d, num=self.number_of_load_cycles_for_analysis)
+
+                df_sel.append(d_sel)
+
+        # replace data
+        self.data = df_sel
+
+        return True
+
+    def _fit_data(self):
+
+        self.fit = []
+
+        for idx_data, data in enumerate(self.data):
+
+            if data is None: continue
+
+            data.index = data.index - data.index[0]
+
+            res = {}
+
+            columns_analyse = [
+                'F',
+                's_hor_sum',
+                's_hor_1',
+                's_hor_2',
+                's_piston',
+            ]
+            ylabel_dict = {
+                'F': 'Kraft in N',
+                's_hor_sum': 'Verformung (Summe) in mm',
+                's_piston': 'Verformung Kolbenweg in mm',
+                's_hor_1': 'Verformung ($S_1$) in mm',
+                's_hor_2': 'Verformung ($S_2$) in mm'
+            }
+
+            fig, axs = plt.subplots(len(columns_analyse),
+                                    1,
+                                    figsize=(8, len(columns_analyse) * 2),
+                                    sharex=True)
+
+            for idxcol, col in enumerate(columns_analyse):
+
+                if not col in data.columns: continue
+
+                x = data.index.values
+                y = data[col].values
+
+                # Fourier Transformation
+                dt = np.diff(x).mean()  #mean sampling rate
+                n = len(x)
+
+                res[f'psd_{col}'] = sfft.rfft(y)  #compute the FFT
+                res[f'freq_{col}'] = sfft.rfftfreq(n, dt)
+
+                # Fitting
+                freq = np.round(data['f'].mean(), 3)
+                sigma = np.round(data['sigma'].mean(), 3)
+
+                res_step1 = fit_sin_anstieg(x, y)
+
+                mod = lm.models.Model(model_cos)
+
+                mod.set_param_hint(
+                    'd',
+                    value=res_step1['offset'],
+                    #min=res_step1['offset'] - 0.5*abs(res_step1['offset']),
+                    #max=res_step1['offset'] + 0.5*abs(res_step1['offset'])
+                )
+
+                mod.set_param_hint(
+                    'a',
+                    value=res_step1['amp'],
+                    #min=res_step1['amp'] - 0.5*abs(res_step1['amp']),
+                    #max=res_step1['amp'] + 0.5*abs(res_step1['amp'])
+                )
+
+                mod.set_param_hint('b', value=res_step1['phase'])
+                mod.set_param_hint('e', value=0)  #, min = -0.5, max = 0.5)
+
+                mod.set_param_hint('f', value=freq, vary=True)
+
+                parms_fit = [
+                    mod.param_hints['a']['value'],
+                    mod.param_hints['b']['value'],
+                    mod.param_hints['d']['value'],
+                    mod.param_hints['e']['value'],
+                    mod.param_hints['f']['value']
+                ]
+
+                abweichung = []
+                chis = []
+                chis_red = []
+                results = []
+                r2 = []
+
+                methods = ['leastsq', 'powell']
+                dof = len(y) - len(parms_fit)
+
+                for method in methods:
+                    #print(method)
+                    result = mod.fit(y, t=x, method=method, verbose=False)
+                    r2temp = 1 - result.residual.var() / np.var(y)
+                    #    r2temp = result.redchi / np.var(yfit, ddof=2)
+                    if r2temp < 0.:
+                        r2temp = 0
+                    r2.append(r2temp)
+                    chi = result.chisqr
+                    chis_red.append(result.redchi)
+                    #print(chi)
+                    abweichung.append(sf.gammaincc(dof / 2., chi / 2))
+                    chis.append(chi)
+                    results.append(result)
+
+                ret = {}
+                best = np.nanargmax(r2)
+
+                ret['model'] = mod
+                ret['x'] = x
+                ret['result'] = results[best]
+
+                res[f'r2_{col}'] = r2[best]
+
+                res[f'fit_a_{col}'] = results[best].best_values['a']
+                res[f'fit_b_{col}'] = results[best].best_values['b']
+                res[f'fit_d_{col}'] = results[best].best_values['d']
+                res[f'fit_e_{col}'] = results[best].best_values['e']
+                res[f'fit_f_{col}'] = results[best].best_values['f']
+
+                res['f'] = freq
+                res['sigma'] = sigma
+
+                res['filename'] = self.file
+
+                yreg = model_cos(x, res[f'fit_a_{col}'], res[f'fit_b_{col}'],
+                                 res[f'fit_d_{col}'], res[f'fit_e_{col}'],
+                                 res[f'fit_f_{col}'])
+
+                plt.sca(axs[idxcol])
+                plt.plot(x, y, label='Messdaten')
+
+                r2 = res[f'r2_{col}']
+                lstr = f'Fit (r² = {r2:0.4f})'
+                plt.plot(x, yreg, label=lstr)
+                plt.xlim([x[0], x[-1]])
+                plt.xlabel('Zeit in s')
+
+                plt.ylabel(ylabel_dict[col])
+                plt.legend()
+
+            #data[['F', 's_hor_sum']].plot(subplots=True)
+            plt.tight_layout()
+
+            ofile = self.file
+            ofile = ofile.replace('/raw/', '/plots/')[:-4]
+            ofile = ofile + f'_{idx_data:03.0f}.pdf'
+
+            ofolder = os.path.split(ofile)[0]
+            if not os.path.exists(ofolder):
+                os.makedirs(ofolder)
+
+            plt.savefig(ofile)
+            plt.close()
+
+            ## Stiffness
+            deltaF = res['fit_a_F']
+            nu = 0.298
+            h = float(self.meta['speciment_height'])
+            deltaU = res['fit_a_s_hor_sum']
+
+            res['E'] = (deltaF * (0.274 + nu)) / (h * deltaU)
+
+            self.fit.append(res)
+            #break
+
+        self.fit = pd.DataFrame.from_records(self.fit)

pytestpavement/versuche/fit.py

@@ -0,0 +1,5 @@
+import numpy as np
+
+
+def model_cos(t, a, b, d, e, f):
+    return a * np.cos(2 * np.pi * f * t + b) + e * t + d

setup.py

@@ -1,17 +1,26 @@
 from setuptools import setup
+from sphinx.setup_command import BuildDoc
 
+cmdclass = {'build_sphinx': BuildDoc}
+
+name = 'PyTestPavement'
+version = '0.01'
+release = '0.0.1'
 setup(
-    name='PyTestPavement',
+    name=name,
-    version='0.1.0',
     author='Markus Clauß',
     author_email='markus.clauss@tu-dresden.de',
-    packages=[
+    version=release,
-        'pytestpavement',
+    cmdclass=cmdclass,
-    ],
+    # these are optional and override conf.py settings
-    #scripts=['bin/script1','bin/script2'],
+    command_options={
-    #url='http://pypi.python.org/pypi/PackageName/',
+        'build_sphinx': {
-    #license='LICENSE.txt',
+            'project': ('setup.py', name),
-    description='',
+            'version': ('setup.py', version),
-    #long_description=open('README.txt').read(),
+            'release': ('setup.py', release),
-    install_requires=['lmfit', 'pandas', 'numpy', 'scipy'],
+            'source_dir': ('setup.py', 'doc')
+        }
+    },
+    install_requires=['lmfit', 'pandas', 'numpy', 'scipy', 'mongoengine'],
+    packages=['pytestpavement'],
 )