638 lines
18 KiB
Python
638 lines
18 KiB
Python
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import os
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import lmfit as lm
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import matplotlib.pyplot as plt
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import numpy as np
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import pandas as pd
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import scipy.fft as sfft
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import seaborn as sns
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from pytestpavement.analysis.regression import fit_cos, fit_cos_eval
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from pytestpavement.io.geosys import read_geosys
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from pytestpavement.labtests.base import DataSineLoad
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from pytestpavement.models.data import DataSheartest
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from pytestpavement.models.sheartest import DynamicShearTestExtension
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class ShearTest(DataSineLoad):
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"""
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Dynamic Shear Bounding Test
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"""
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def __init__(self,
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fname: str,
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debug: bool = False,
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gap_width: float = 1.0,
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roundtemperature: bool = True):
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#set parameter
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self.gap_width = gap_width
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self.debug = debug
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self.file = fname
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self.roundtemperature = roundtemperature
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# process file
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self._run()
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def plot_fited_data(self, opath=None, pkname=None, r2min=0.99):
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ylabel_dict = {
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'F': 'Kraft in N',
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's_vert_sum': 'norm. mittlerer Scherweg\n $S_{mittel}$ in mm',
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's_piston': 'norm. Kolbenweg\n in mm',
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's_vert_1': 'Scherweg\n $S_1$ in mm',
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's_vert_2': 'Scherweg\n $S_2$ in mm'
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}
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columns_analyse = [
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'F',
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's_vert_sum',
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's_vert_1',
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's_vert_2',
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's_piston',
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]
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if not (opath is None) & (pkname is None):
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showplot = False
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opath = os.path.join(opath, pkname, 'raw_data')
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if not os.path.exists(opath):
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os.makedirs(opath)
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else:
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showplot = True
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for i, fit in self.fit.iterrows():
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if not any([fit['r2_F'] < r2min, fit['r2_s_vert_sum'] < r2min]):
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continue
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data = self.data[int(fit['idx_data'])]
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if data is None:
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continue
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freq = data['f'].unique()[0]
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sigma = data['sigma_normal'].unique()[0]
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s = data['extension'].unique()[0]
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T = data['T'].unique()[0]
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fig, axs = plt.subplots(len(columns_analyse),
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1,
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figsize=(8, len(columns_analyse) * 2),
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sharex=True)
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for idxcol, col in enumerate(columns_analyse):
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x, y = data.index, data[col]
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#add fit
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f = self.fit.iloc[i]
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parfit = {}
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for k in ['amp', 'freq', 'phase', 'offset', 'slope']:
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parfit[k] = f[f'fit_{k}_{col}']
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yreg = fit_cos_eval(x, parfit)
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if col in ['s_piston', 's_vert_sum']:
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y = y - np.mean(y)
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yreg = yreg - np.mean(yreg)
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plt.sca(axs[idxcol])
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plt.plot(x, y, label='Messdaten')
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r2 = np.round(f[f'r2_{col}'], 3)
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plt.plot(x,
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yreg,
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alpha=0.7,
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label=f'Regression ($R^2 = {r2}$)')
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if not ('F' in col):
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s = f['extension']
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parline = dict(lw=0.4,
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ls='--',
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color='lightgrey',
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alpha=0.4,
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label='Bereich des zul. Scherweges')
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plt.axhspan(-s, s, **parline)
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if idxcol == len(columns_analyse) - 1:
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plt.xlabel('Zeit in s')
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plt.ylabel(ylabel_dict[col])
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plt.legend()
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plt.tight_layout()
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if showplot:
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plt.show()
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break
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else:
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ofile = f'{T}deg_{sigma}MPa_{freq}Hz_{s}mm'.replace('.', 'x')
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ofile = os.path.join(opath, ofile + '.pdf')
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plt.savefig(ofile)
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plt.close()
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class ShearTestExtension(ShearTest):
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def runfit(self):
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self._fit_data()
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def save(self, material1, material2, bounding, meta: dict):
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for i, fit in self.fit.iterrows():
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data = self.data[int(fit['idx_data'])]
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#check if data in db
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n = DynamicShearTestExtension.objects(
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f=fit['f'],
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sigma_normal=fit['sigma_normal'],
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T=fit['T'],
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extension=fit['extension'],
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material1=material1,
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material2=material2,
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bounding=bounding,
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filehash=self.filehash,
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).count()
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if n > 0: continue
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#save data
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rdata = DataSheartest(
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time=data.index.values,
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F=data['F'].values,
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N=data['N'].values,
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s_vert_1=data['s_vert_1'].values,
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s_vert_2=data['s_vert_2'].values,
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s_vert_sum=data['s_vert_sum'].values,
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s_piston=data['s_piston'].values,
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).save()
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# save fit
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values = {}
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for col in ['F', 's_vert_1', 's_vert_2', 's_vert_sum']:
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values[f'fit_amp_{col}'] = fit[f'fit_amp_{col}']
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values[f'fit_freq_{col}'] = fit[f'fit_freq_{col}']
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values[f'fit_phase_{col}'] = fit[f'fit_phase_{col}']
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values[f'fit_offset_{col}'] = fit[f'fit_offset_{col}']
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values[f'fit_slope_{col}'] = fit[f'fit_slope_{col}']
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values.update(meta)
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try:
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r = DynamicShearTestExtension(
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#metadata
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f=fit['f'],
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sigma_normal=fit['sigma_normal'],
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T=fit['T'],
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extension=fit['extension'],
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filehash=self.filehash,
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material1=material1,
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material2=material2,
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bounding=bounding,
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#results
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data=rdata,
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stiffness=fit['G'],
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#
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**values).save()
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except:
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rdata.delete()
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def _set_parameter(self):
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self.split_data_based_on_parameter = [
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'T', 'sigma_normal', 'f', 'extension'
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]
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self.col_as_int = ['N']
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self.col_as_float = ['T', 'F', 'f', 's_vert_sum']
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self.val_col_names = ['time', 'T', 'f', 'N', 'F', 's_vert_sum']
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# Header names after standardization; check if exists
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self.val_header_names = ['speciment_diameter']
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self.columns_analyse = [
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'F', 's_vert_sum', 's_vert_1', 's_vert_2', 's_piston'
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]
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self.number_of_load_cycles_for_analysis = 5
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def _calc_missiong_values(self):
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cols = self.data.columns
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for c in ['vert']:
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if not f's_{c}_sum' in cols:
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self.data[f's_{c}_sum'] = self.data[[f's_{c}_1', f's_{c}_2'
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]].sum(axis=1).div(2.0)
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def _fit_data(self):
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self.fit = []
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for idx_data, data in enumerate(self.data):
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if data is None: continue
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data.index = data.index - data.index[0]
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res = {}
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res['idx_data'] = int(idx_data)
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# Fitting
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freq = float(np.round(data['f'].mean(), 4))
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if (self.debug):
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sigma_normal = np.round(data['sigma_normal'].mean(), 3)
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T = np.round(data['T'].mean(), 3)
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for idxcol, col in enumerate(self.columns_analyse):
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if not col in data.columns: continue
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x = data.index.values
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y = data[col].values
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# Fourier Transformation
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"""
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dt = np.diff(x).mean() #mean sampling rate
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n = len(x)
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res[f'psd_{col}'] = sfft.rfft(y) #compute the FFT
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res[f'freq_{col}'] = sfft.rfftfreq(n, dt)
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"""
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res_fit = fit_cos(x, y, freq=freq, constfreq=True)
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res[f'r2_{col}'] = res_fit['r2']
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res[f'fit_amp_{col}'] = res_fit['amp']
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res[f'fit_freq_{col}'] = res_fit['freq']
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res[f'fit_phase_{col}'] = res_fit['phase']
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res[f'fit_offset_{col}'] = res_fit['offset']
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res[f'fit_slope_{col}'] = res_fit['slope']
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## Schersteifigkeit berechnen
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deltaF = res['fit_amp_F']
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deltaS = res['fit_amp_s_vert_sum']
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A = np.pi * self.meta['speciment_diameter']**2 / 4
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tau = deltaF / A
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gamma = deltaS / self.gap_width
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res['G'] = tau / gamma
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#metadaten
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for c in ['T', 'extension', 'sigma_normal', 'f']:
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res[c] = data[c][0]
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self.fit.append(res)
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if (self.debug) & (len(self.fit) > 5):
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break
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self.fit = pd.DataFrame.from_records(self.fit)
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def plot_results(self, opath=None, pkname=None, r2min=0.96):
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if not (opath is None) & (pkname is None):
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showplot = False
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opath = os.path.join(opath, pkname)
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if not os.path.exists(opath):
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os.makedirs(opath)
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else:
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showplot = True
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dfplot = self.fit.copy()
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for col in ['extension', 'fit_amp_s_vert_sum']:
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dfplot[col] = dfplot[col].mul(1000)
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fig, ax = plt.subplots()
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xticks = list(dfplot['extension'].unique())
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df = dfplot
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df = df[(df['r2_F'] >= r2min) & (df['r2_s_vert_sum'] >= r2min)]
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sns.scatterplot(
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data=df,
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x='fit_amp_s_vert_sum',
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y='G',
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hue='T',
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ax=ax,
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alpha=0.7,
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#size=150,
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size="G",
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sizes=(50, 160),
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edgecolor='k',
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palette='muted',
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zorder=10)
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df = dfplot
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df = df[(df['r2_F'] < r2min) & (df['r2_s_vert_sum'] < r2min)]
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if not df.empty:
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sns.scatterplot(data=df,
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x='fit_amp_s_vert_sum',
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y='G',
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facecolor='grey',
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alpha=0.5,
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legend=False,
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zorder=1,
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ax=ax)
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ax.set_xlabel('gemessene Scherwegamplitude in $\mu m$')
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ax.set_ylabel('Scherseteifigkeit in MPa/mm')
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ax.set_xticks(xticks)
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ax.grid()
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if not showplot:
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ofile = os.path.join(opath, 'shearstiffness.pdf')
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plt.savefig(ofile)
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plt.show()
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def plot_stats(self, opath=None, pkname=None, r2min=0.96):
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if not (opath is None) & (pkname is None):
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showplot = False
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opath = os.path.join(opath, pkname)
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if not os.path.exists(opath):
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os.makedirs(opath)
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else:
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showplot = True
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dfplot = self.fit.copy()
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for col in ['extension', 'fit_amp_s_vert_sum']:
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dfplot[col] = dfplot[col].mul(1000)
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#r2
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df = self.fit
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fig, axs = plt.subplots(1, 2, sharey=True, sharex=True)
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parscatter = dict(palette='muted', alpha=0.7, edgecolor='k', lw=0.3)
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# r2
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ax = axs[0]
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sns.scatterplot(data=df,
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x='fit_amp_s_vert_sum',
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y='r2_F',
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hue='T',
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ax=ax,
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**parscatter)
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||
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|
ax.set_ylabel('Bestimmtheitsmaß $R^2$')
|
||
|
|
ax.set_title('Kraft')
|
||
|
|
|
||
|
|
ax = axs[1]
|
||
|
|
sns.scatterplot(data=df,
|
||
|
|
x='fit_amp_s_vert_sum',
|
||
|
|
y='r2_s_vert_sum',
|
||
|
|
hue='T',
|
||
|
|
legend=False,
|
||
|
|
ax=ax,
|
||
|
|
**parscatter)
|
||
|
|
ax.set_ylabel('$R^2$ (S_{mittel})')
|
||
|
|
ax.set_title('mittlerer Scherweg')
|
||
|
|
|
||
|
|
for ax in axs.flatten():
|
||
|
|
ax.grid()
|
||
|
|
ax.set_xlabel('gemessene Scherwegamplitude in $\mu m$')
|
||
|
|
|
||
|
|
plt.tight_layout()
|
||
|
|
|
||
|
|
if not showplot:
|
||
|
|
ofile = os.path.join(opath, 'stats_r2.pdf')
|
||
|
|
plt.savefig(ofile)
|
||
|
|
plt.show()
|
||
|
|
|
||
|
|
|
||
|
|
class ShearTestExtensionLaborHart(ShearTestExtension):
|
||
|
|
|
||
|
|
def _define_units(self):
|
||
|
|
|
||
|
|
self.unit_F = 1 / 1000.0 #N
|
||
|
|
self.unit_t = 1 / 1000. #s
|
||
|
|
|
||
|
|
def _set_units(self):
|
||
|
|
|
||
|
|
#for col in ['F']:
|
||
|
|
# self.data[col] = self.data[col].mul(self.unit_F)
|
||
|
|
|
||
|
|
for col in ['time']:
|
||
|
|
self.data[col] = self.data[col].mul(self.unit_t)
|
||
|
|
|
||
|
|
return True
|
||
|
|
|
||
|
|
def _read_data(self):
|
||
|
|
"""
|
||
|
|
read data from Labor Hart
|
||
|
|
"""
|
||
|
|
|
||
|
|
# parameter
|
||
|
|
encoding = 'latin-1'
|
||
|
|
skiprows = 14
|
||
|
|
hasunits = True
|
||
|
|
splitsign = ':;'
|
||
|
|
|
||
|
|
# metadata from file
|
||
|
|
meta = {}
|
||
|
|
|
||
|
|
with open(self.file, 'r', encoding=encoding) as f:
|
||
|
|
count = 0
|
||
|
|
|
||
|
|
for line in f:
|
||
|
|
count += 1
|
||
|
|
|
||
|
|
#remove whitespace
|
||
|
|
linesplit = line.strip()
|
||
|
|
linesplit = linesplit.split(splitsign)
|
||
|
|
|
||
|
|
if len(linesplit) == 2:
|
||
|
|
|
||
|
|
meta[linesplit[0]] = linesplit[1]
|
||
|
|
|
||
|
|
if count >= skiprows:
|
||
|
|
break
|
||
|
|
|
||
|
|
# data
|
||
|
|
data = pd.read_csv(self.file,
|
||
|
|
encoding=encoding,
|
||
|
|
skiprows=skiprows,
|
||
|
|
decimal=',',
|
||
|
|
sep=';')
|
||
|
|
|
||
|
|
## add header to df
|
||
|
|
with open(self.file, 'r', encoding=encoding) as f:
|
||
|
|
count = 0
|
||
|
|
|
||
|
|
for line in f:
|
||
|
|
count += 1
|
||
|
|
|
||
|
|
if count >= skiprows:
|
||
|
|
break
|
||
|
|
|
||
|
|
head = line.split(';')
|
||
|
|
data.columns = head
|
||
|
|
|
||
|
|
#clean data
|
||
|
|
data = data.dropna(axis=1)
|
||
|
|
|
||
|
|
#define in class
|
||
|
|
self.meta = meta
|
||
|
|
self.data = data
|
||
|
|
return True
|
||
|
|
|
||
|
|
def _standardize_meta(self):
|
||
|
|
|
||
|
|
keys = list(self.meta.keys())
|
||
|
|
for key in keys:
|
||
|
|
|
||
|
|
if any(map(key.__contains__, ['Probenbezeichnung'])):
|
||
|
|
self.meta['speciment'] = self.meta.pop(key)
|
||
|
|
|
||
|
|
elif any(map(key.__contains__, ['Datum/Uhrzeit'])):
|
||
|
|
self.meta['datetime'] = self.meta.pop(key)
|
||
|
|
try:
|
||
|
|
self.meta['datetime'] = pd.to_datetime(
|
||
|
|
self.meta['datetime'])
|
||
|
|
except:
|
||
|
|
pass
|
||
|
|
|
||
|
|
elif any(map(key.__contains__, ['Probenhöhe'])):
|
||
|
|
self.meta['speciment_height'] = float(
|
||
|
|
self.meta.pop(key).replace(',', '.'))
|
||
|
|
elif any(map(key.__contains__, ['Probendurchmesser'])):
|
||
|
|
self.meta['speciment_diameter'] = float(
|
||
|
|
self.meta.pop(key).replace(',', '.'))
|
||
|
|
elif any(map(key.__contains__, ['Solltemperatur'])):
|
||
|
|
self.meta['temperature'] = float(
|
||
|
|
self.meta.pop(key).replace(',', '.'))
|
||
|
|
elif any(map(key.__contains__, ['Prüfbedingungen'])):
|
||
|
|
self.meta['test_version'] = self.meta.pop(key)
|
||
|
|
elif any(map(key.__contains__, ['Name des VersAblf'])):
|
||
|
|
self.meta['test'] = self.meta.pop(key)
|
||
|
|
elif any(map(key.__contains__, ['Prüfer'])):
|
||
|
|
self.meta['examiner'] = self.meta.pop(key)
|
||
|
|
|
||
|
|
return True
|
||
|
|
|
||
|
|
def _standardize_data(self):
|
||
|
|
|
||
|
|
colnames = list(self.data.columns)
|
||
|
|
|
||
|
|
for i, col in enumerate(colnames):
|
||
|
|
if col == 'TIME':
|
||
|
|
colnames[i] = 'time'
|
||
|
|
|
||
|
|
#set values
|
||
|
|
elif col == 'Sollwert Frequenz':
|
||
|
|
colnames[i] = 'f'
|
||
|
|
elif col == 'SollTemperatur':
|
||
|
|
colnames[i] = 'T'
|
||
|
|
elif col == 'Max Scherweg':
|
||
|
|
colnames[i] = 'extension'
|
||
|
|
elif col == 'Sollwert Normalspannung':
|
||
|
|
colnames[i] = 'sigma_normal'
|
||
|
|
elif col == 'Impulsnummer':
|
||
|
|
colnames[i] = 'N'
|
||
|
|
|
||
|
|
# measurements
|
||
|
|
|
||
|
|
elif col == 'Load':
|
||
|
|
colnames[i] = 'F'
|
||
|
|
elif col == 'Position':
|
||
|
|
colnames[i] = 's_piston'
|
||
|
|
|
||
|
|
elif col == 'VERTIKAL Links':
|
||
|
|
colnames[i] = 's_vert_1'
|
||
|
|
elif col == 'VERTIKAL Rechts':
|
||
|
|
colnames[i] = 's_vert_2'
|
||
|
|
|
||
|
|
elif col == 'HORIZONTAL links':
|
||
|
|
colnames[i] = 's_hor_1'
|
||
|
|
|
||
|
|
elif col == 'HOIZONTAL Rechts':
|
||
|
|
colnames[i] = 's_hor_2'
|
||
|
|
|
||
|
|
self.data.columns = colnames
|
||
|
|
|
||
|
|
|
||
|
|
class ShearTestExtensionTUDresdenGeosys(ShearTestExtension):
|
||
|
|
|
||
|
|
def _define_units(self):
|
||
|
|
|
||
|
|
self.unit_S = 1 / 1000.0 #N
|
||
|
|
|
||
|
|
def _set_units(self):
|
||
|
|
|
||
|
|
for col in [
|
||
|
|
's_vert_sum', 's_vert_1', 's_vert_2', 's_piston', 'extension'
|
||
|
|
]:
|
||
|
|
self.data[col] = self.data[col].mul(self.unit_S)
|
||
|
|
|
||
|
|
return True
|
||
|
|
|
||
|
|
def _read_data(self):
|
||
|
|
"""
|
||
|
|
read data from Labor Hart
|
||
|
|
"""
|
||
|
|
|
||
|
|
# parameter
|
||
|
|
encoding = 'latin-1'
|
||
|
|
skiprows = 14
|
||
|
|
hasunits = True
|
||
|
|
splitsign = ':;'
|
||
|
|
|
||
|
|
head, data = read_geosys(self.file, '015')
|
||
|
|
|
||
|
|
#define in class
|
||
|
|
self.meta = head
|
||
|
|
self.data = data
|
||
|
|
return True
|
||
|
|
|
||
|
|
def _standardize_meta(self):
|
||
|
|
|
||
|
|
keys = list(self.meta.keys())
|
||
|
|
for key in keys:
|
||
|
|
|
||
|
|
if key == 'd':
|
||
|
|
self.meta['speciment_diameter'] = self.meta.pop(key)
|
||
|
|
|
||
|
|
return True
|
||
|
|
|
||
|
|
def _standardize_data(self):
|
||
|
|
|
||
|
|
colnames = list(self.data.columns)
|
||
|
|
|
||
|
|
for i, col in enumerate(colnames):
|
||
|
|
|
||
|
|
#set values
|
||
|
|
if col == 'soll temperature':
|
||
|
|
colnames[i] = 'T'
|
||
|
|
elif col == 'soll extension':
|
||
|
|
colnames[i] = 'extension'
|
||
|
|
elif col == 'soll sigma':
|
||
|
|
colnames[i] = 'sigma_normal'
|
||
|
|
elif col == 'soll frequency':
|
||
|
|
colnames[i] = 'f'
|
||
|
|
|
||
|
|
elif col == 'Number of vertical cycles':
|
||
|
|
colnames[i] = 'N'
|
||
|
|
|
||
|
|
# measurements
|
||
|
|
elif col == 'vertical load from hydraulic pressure':
|
||
|
|
colnames[i] = 'F'
|
||
|
|
elif col == 'vertical position from hydraulic pressure':
|
||
|
|
colnames[i] = 's_piston'
|
||
|
|
|
||
|
|
elif col == 'Vertical position from LVDT 1':
|
||
|
|
colnames[i] = 's_vert_1'
|
||
|
|
elif col == 'Vertical position from LVDT 2':
|
||
|
|
colnames[i] = 's_vert_2'
|
||
|
|
|
||
|
|
self.data.columns = colnames
|